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NGS application on Non-model organisms; opportunities and pitfalls
Shaadi F. P. Mehr
Posted: Wednesday, July 18, 2012 4:24 PM
Joined: 3/4/2011
Posts: 1

Hi All, 

I would like to start a discussion on two questions:
1-  How to evaluate the assembled Illumina RNA-seq data generated from different programs on non-model organisms?
2- What is the best way of estimating the coverage of the Illumina reads in non-model organisms?
Although, our group at AMNH is in the process of developing a computational pipeline to address these issues, I was wondering if anyone else is dealing with the same issue as us. 
P.S. I will be presenting a poster about this pipeline on August 13th ,NGS conference , RI. 

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